RAxML

分享者：bio0015

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更新时间：20241025

conda activate kraken2

kraken2 --threads 60 --paired **--db /platform_data/Database/kraken2** --report JX1JX2.kreport --output JX1JX2.kraken /platform_data/User/bio0015/respiratory_tract_data/clean_data/Human_lsussu_clean_JX_1-JX_2_1.fq.gz /platform_data/User/bio0015/respiratory_tract_data/clean_data/Human_lsussu_clean_JX_1-JX_2_2.fq.gz

###bracken,用kraken2 report文件作为输入

 bracken -d /platform_data/Database/kraken2 -i HT3.kreport -o ./bracken_out/HT3.bracken.G -w ./bracken_out/HT3.bracken.G.kreport -l G -t 60